Whole Exome sequencing for the 1000 Genomes Project - SRA

SRX103408: Whole Exome sequencing for the 1000 Genomes Project
8 ILLUMINA (Illumina HiSeq 2000) runs: 24M spots, 3.8G bases, 2.5Gb downloads

Design: Whole Exome sequencing for the 1000 Genomes Project via in-solution hybrid selection

Submitted by: Broad Institute (BI)

Study: Exome sequencing of (KHV) Kinh in Ho Chi minh City, Vietnam HapMap population

Sample: Coriell HG02025

Library:

Name: Catch-88584

Instrument: Illumina HiSeq 2000

Strategy: WXS

Source: GENOMIC

Selection: Hybrid Selection

Layout: PAIRED

Spot descriptor:

1 forward barcode

Group tag	Basecalls
tagged_851	TCCAGCAA

85 reverse

BI GSSR sample ID: 120518.0 
BI GSSR sample LSID: broadinstitute.org:bsp.prod.sample:25MSH 
BI project name: C469 
BI work request ID: 26159 

Name	Step	Program	Version
base caller	2011-09-12 08:37:04.0	GAPipeline	RTA1.12.4.2

Runs: 8 runs, 24M spots, 3.8G bases, 2.5Gb

Run	# of Spots	# of Bases	Size	Published
SRR359814	2,671,017	427.4M	288.7Mb	2011-10-31
SRR359822	3,075,765	492.1M	335.3Mb	2011-10-31
SRR359833	3,038,637	486.2M	330.4Mb	2011-10-31
SRR360216	3,123,288	499.7M	338.4Mb	2011-11-01
SRR360222	3,061,454	489.8M	332Mb	2011-11-01
SRR360224	2,979,045	476.6M	322.2Mb	2011-11-01
SRR363073	3,074,906	492M	333.1Mb	2011-11-07
SRR363076	3,020,327	483.3M	325.6Mb	2011-11-07

Supplemental Content

Arabidopsis thaliana photosystem II light harvesting complex protein 2.2 (LHCB2....
Arabidopsis thaliana photosystem II light harvesting complex protein 2.2 (LHCB2.2), mRNA
gi|1063700125|ref|NM_126537.4|

Nucleotide
Gdi1 protein, partial [Tricholoma sulphureum]
Gdi1 protein, partial [Tricholoma sulphureum]
gi|2288963971|gb|UVH37843.1|

Protein
Ceraceomyces sulphurinus CFMR:HHB-5604 28S large subunit ribosomal RNA gene, par...
Ceraceomyces sulphurinus CFMR:HHB-5604 28S large subunit ribosomal RNA gene, partial sequence
gi|300394414|gb|GU187610.1|

Nucleotide
Upper Extremity
Upper Extremity
The region of the upper limb in animals, extending from the deltoid region to the HAND, and including the ARM; AXILLA; and SHOULDER.<br/>Year introduced: 2003

MeSH
Forearm
Forearm
Part of the upper extremity in humans and primates extending from the ELBOW to the WRIST.<br/>

MeSH

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